PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D01124.1.p
Common NameLOC105972432, MIMGU_mgv1a009879mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family WRKY
Protein Properties Length: 329aa    MW: 36473.4 Da    PI: 9.082
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D01124.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.21.9e-29178237159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dgy+WrKYGqK+ +++++pr+Y++C++a +Cpvkkkv+rs ed+++v+ tYegeHnh+
  Migut.D01124.1.p 178 VKDGYQWRKYGQKVTRDNPCPRAYFKCSFApTCPVKKKVQRSIEDQSIVVATYEGEHNHS 237
                       58***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-28173237IPR003657WRKY domain
PROSITE profilePS5081125.017173239IPR003657WRKY domain
SuperFamilySSF1182908.24E-25176237IPR003657WRKY domain
SMARTSM007743.2E-33178238IPR003657WRKY domain
PfamPF031065.3E-24179236IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0002238Biological Processresponse to molecule of fungal origin
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009623Biological Processresponse to parasitic fungus
GO:0009651Biological Processresponse to salt stress
GO:0009685Biological Processgibberellin metabolic process
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEFTSLLNTS LNLNTKPLRF LDESPAQKQE VVESSFTIGL ERNSATLKEE RGALVEEINR  60
VNAENKKLTE ILTVMCENYN ELRNQLAEHQ TSNNNNNNHG GVLLEDSNNN NITASKKRKA  120
DQTNIINSNN NNNNVGNSES SSSDEDSSKK LPREEIVKAK ISRVFVRTES SSDSSLIVKD  180
GYQWRKYGQK VTRDNPCPRA YFKCSFAPTC PVKKKVQRSI EDQSIVVATY EGEHNHSHQL  240
SKNETNSTSL SSTAPSISVV DNLAKKTKQS KEDARSSNSK GKIDSSPQQQ QQLQHYLVEQ  300
MASTLTKDPN FKAALAAAIS GKFLSSAK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21162236171WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ2224538e-53FJ222453.1 Boea hygrometrica transcriptional factor WRKY I (WRKY1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012852845.10.0PREDICTED: probable WRKY transcription factor 40
TrEMBLA0A022QDM60.0A0A022QDM6_ERYGU; Uncharacterized protein
STRINGSolyc03g116890.2.11e-106(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28552450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.13e-72WRKY DNA-binding protein 40